A Content-Centric Organization of the Genetic Code

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摘要 Thecodontableforthecanonicalgeneticcodecanberearrangedinsuchawaythatthecodeisdividedintofourquartersandtwohalvesaccordingtothevari-abilityoftheirGCandpurinecontents,respectively.Forprokaryoticgenomes,whenthegenomicGCcontentincreases,theiraminoacidcontentstendtoberestrictedtotheGC-richquarterandthepurine-contentinsensitivehalf,whereallcodonsarefourfolddegenerateandrelativelymutation-tolerant.Conversely,whenthegenomicGCcontentdecreases,mostofthecodonsretracttotheAU-richquarterandthepurine-contentsensitivehalf;mostofthecodonsnotonlyremainencodingphysicochemicallydiversifiedaminoacidsbutalsovarywhentransversion(betweenpurineandpyrimidine)happens.Aminoacidswithsixfold-degeneratecodonsaredistributedintoallfourquartersandacrossthetwohalves;theirfourfold-degeneratecodonsareallpartitionedintothepurine-insensitivehalfinfavoriteofrobustnessagainstmutations.Thefeaturesmanifestedinthere-arrangedcodontableexplainmostoftheintrinsicrelationshipbetweenproteincodingsequences(theinformationalcontent)andaminoacidcompositions(thefunctionalcontent).Therenovatedcodontableisusefulinpredictingabundantaminoacidsandpositioningtheaminoacidswithrelatedordistinctphysicochem-icalproperties.
作者 Jun Yu
机构地区 不详
出版日期 2007年01月11日(中国期刊网平台首次上网日期,不代表论文的发表时间)
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